Basic Information
Locus ID:
populus_peu02096
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 32230240 | 32232364 | + | populus_peu02096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 48,867.04 Da | 68.06 | 65.66 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 248 | 289 | 1.48533E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 307 | 415 | 1.4E-29 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 79 | 120 | 4.9E-14 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 247 | 289 | 7.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 295 | 9.72E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 213 | 295 | 2.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 248 | 288 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 248 | 289 | 12.046688 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_011035277.1 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Populus euphratica] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AH18 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_005439 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology