Basic Information
Locus ID:
populus_peu01790
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 28791737 | 28804039 | - | populus_peu01790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 98,163.23 Da | 52.66 | 76.78 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 207 | 344 | 2.80257E-34 | - |
| CDD | cd00821 | PH | 22 | 146 | 5.93015E-9 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 625 | 705 | 2.5E-21 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 207 | 351 | 1.3E-31 | IPR000198 |
| Pfam | PF00169 | PH domain | 21 | 150 | 3.0E-10 | IPR001849 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 207 | 352 | 1.22E-31 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 20 | 150 | 8.31E-16 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 10 | 152 | 2.0E-14 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 175 | 364 | 7.8E-39 | IPR008936 |
| SMART | SM00233 | PH_update | 20 | 153 | 8.7E-12 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 204 | 387 | 1.6E-23 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 198 | 378 | 26.97521 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 19 | 151 | 14.2549 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 799 | - | - |
| Coils | Coil | Coil | 835 | 862 | - | - |
| Coils | Coil | Coil | 681 | 708 | - | - |
| Coils | Coil | Coil | 234 | 254 | - | - |
| Coils | Coil | Coil | 615 | 649 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_011024980.1 | PREDICTED: rho GTPase-activating protein 7 isoform X1 [Populus euphratica] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | U5GWX2 | Rho GTPase-activating protein 7-like OS=Populus trichocarpa OX=3694 GN=POPTR_001G275200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology