Basic Information
Locus ID:
populus_peu01375
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 24022843 | 24026302 | - | populus_peu01375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 44,271.46 Da | 56.41 | 66.29 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 257 | 321 | 5.7797E-21 | - |
| CDD | cd16872 | ARID_HMGB9-like | 21 | 104 | 2.47797E-48 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 257 | 324 | 7.5E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 21 | 104 | 2.4E-19 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 250 | 328 | 3.8E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 17 | 114 | 1.57E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 240 | 332 | 2.4E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 14 | 115 | 1.8E-27 | IPR036431 |
| SMART | SM01014 | ARID_2 | 14 | 104 | 7.4E-28 | - |
| SMART | SM00501 | bright_3 | 18 | 109 | 8.3E-29 | IPR001606 |
| SMART | SM00398 | hmgende2 | 256 | 325 | 5.6E-18 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 257 | 324 | 14.89486 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 17 | 108 | 26.031172 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 251 | - | - |
| Coils | Coil | Coil | 306 | 326 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_024454524.1 | high mobility group B protein 15 [Populus trichocarpa] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8DEI9 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_005990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology