Basic Information
Locus ID:
populus_peu01062
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 19047948 | 19053911 | - | populus_peu01062 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 80,588.01 Da | 51.77 | 62.16 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 411 | 472 | 2.43857E-37 | - |
| CDD | cd00201 | WW | 48 | 79 | 7.24775E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 409 | 463 | 4.1E-20 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 215 | 364 | 2.0E-27 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 39 | 81 | 6.85E-9 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 229 | 499 | 2.88E-38 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 174 | 377 | 2.89E-56 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 38 | 86 | 7.4E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 398 | 520 | 4.2E-25 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 167 | 379 | 4.3E-67 | IPR027417 |
| SMART | SM00487 | ultradead3 | 210 | 392 | 4.0E-45 | IPR014001 |
| SMART | SM00490 | helicmild6 | 390 | 463 | 1.3E-19 | IPR001650 |
| SMART | SM00456 | ww_5 | 46 | 79 | 1.6E-5 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 222 | 375 | 19.701262 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 191 | 219 | 10.704907 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 336 | 502 | 18.132389 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 45 | 79 | 11.3884 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 51 | 77 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 615 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 629 | 739 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 615 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_011047343.1 | PREDICTED: DEAD-box ATP-dependent RNA helicase 46 [Populus euphratica] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8DEQ6 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_006262 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology