Basic Information
Locus ID:
populus_peu00902
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15910970 | 15913878 | - | populus_peu00902 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 42,966.77 Da | 35.76 | 96.65 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 34 | 101 | 1.5E-4 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 210 | 325 | 6.2E-11 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 180 | 326 | 6.41E-17 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 28 | 170 | 2.35E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 21 | 169 | 1.7E-7 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 170 | 326 | 2.0E-8 | IPR036378 |
| SMART | SM00554 | fasc_3 | 58 | 173 | 3.1 | IPR000782 |
| SMART | SM00554 | fasc_3 | 222 | 326 | 4.8E-15 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 22 | 170 | 9.257555 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 184 | 323 | 8.43123 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 361 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_011038795.1 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Populus euphratica] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2C9J0 | Fasciclin-like arabinogalactan protein 1 OS=Populus trichocarpa OX=3694 GN=POPTR_001G367900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology