Basic Information
Locus ID:
populus_peu00811
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 14392493 | 14397914 | - | populus_peu00811 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.06 | 137,906.53 Da | 35.71 | 105.54 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 325 | 612 | 4.19532E-99 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 638 | 838 | 5.4834E-109 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 946 | 1235 | 2.10507E-89 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 656 | 790 | 4.2E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 324 | 591 | 7.0E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 949 | 1190 | 8.6E-28 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 312 | 616 | 8.37E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 636 | 860 | 9.22E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 946 | 1235 | 8.24E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 622 | 887 | 7.1E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 292 | 620 | 6.2E-45 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 909 | 1236 | 2.2E-55 | IPR036640 |
| SMART | SM00382 | AAA_5 | 665 | 838 | 1.9E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 638 | 861 | 21.988907 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 948 | 1227 | 35.961178 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 324 | 604 | 31.099298 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 763 | 777 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 916 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_011010733.1 | PREDICTED: ABC transporter C family member 3-like [Populus euphratica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2C9B8 | ABC-type xenobiotic transporter OS=Populus trichocarpa OX=3694 GN=POPTR_001G362300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology