Basic Information
Locus ID:
populus_peu00810
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 14384596 | 14388695 | - | populus_peu00810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 113,856.55 Da | 40.63 | 101.56 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 244 | 505 | 1.31578E-86 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 521 | 687 | 1.52621E-89 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 773 | 989 | 1.31218E-65 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 247 | 501 | 1.3E-19 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 775 | 1014 | 4.8E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 539 | 673 | 3.7E-18 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 772 | 1008 | 2.75E-41 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 517 | 688 | 1.88E-39 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 234 | 486 | 1.12E-23 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 212 | 506 | 1.0E-34 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 507 | 735 | 1.0E-53 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 736 | 1015 | 1.8E-45 | IPR036640 |
| SMART | SM00382 | AAA_5 | 548 | 726 | 1.7E-8 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 775 | 1015 | 31.886478 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 243 | 504 | 25.765873 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 521 | 741 | 17.833933 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 646 | 660 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_011010734.1 | PREDICTED: ABC transporter C family member 3-like isoform X1 [Populus euphratica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2C9C5 | ABC-type xenobiotic transporter OS=Populus trichocarpa OX=3694 GN=POPTR_001G362200 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology