Basic Information
Locus ID:
populus_peu00801
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 13918963 | 13921952 | + | populus_peu00801 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 71,994.88 Da | 36.00 | 100.35 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 408 | 625 | 5.07555E-119 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 129 | 385 | 3.34873E-81 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 131 | 341 | 3.0E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 427 | 575 | 5.0E-30 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 403 | 638 | 5.63E-61 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 128 | 391 | 8.5E-44 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 393 | 643 | 1.5E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 62 | 392 | 5.0E-49 | IPR036640 |
| SMART | SM00382 | AAA_5 | 436 | 616 | 1.3E-8 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 410 | 641 | 17.600506 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 131 | 365 | 32.312393 | IPR011527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 97 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_011010734.1 | PREDICTED: ABC transporter C family member 3-like isoform X1 [Populus euphratica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3N7FEW4 | ABC-type xenobiotic transporter OS=Populus trichocarpa OX=3694 GN=POPTR_001G362200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology