Basic Information
Locus ID:
populus_peu00799
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 13906484 | 13912661 | + | populus_peu00799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 154,338.70 Da | 40.14 | 104.27 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 227 | 514 | 2.9724E-101 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 540 | 729 | 8.22366E-97 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1134 | 1354 | 1.05226E-123 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 837 | 1111 | 1.34352E-68 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 558 | 692 | 4.9E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 226 | 493 | 8.3E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 841 | 1005 | 2.6E-16 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1154 | 1301 | 1.9E-29 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 837 | 1117 | 3.79E-36 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1129 | 1366 | 1.9E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 214 | 519 | 5.1E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 538 | 751 | 2.21E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1119 | 1372 | 1.7E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 801 | 1117 | 6.9E-41 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 523 | 778 | 8.0E-66 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 197 | 522 | 5.4E-45 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1162 | 1354 | 6.9E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 567 | 729 | 3.0E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 226 | 506 | 31.099298 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 839 | 1007 | 24.166796 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 540 | 752 | 19.107769 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1136 | 1370 | 18.254097 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 665 | 679 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 807 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_011010733.1 | PREDICTED: ABC transporter C family member 3-like [Populus euphratica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K2C9B8 | ABC-type xenobiotic transporter OS=Populus trichocarpa OX=3694 GN=POPTR_001G362300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology