Basic Information
Locus ID:
populus_peu00528
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
spa1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7230884 | 7237340 | + | populus_peu00528 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 92,758.49 Da | 61.49 | 76.26 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 679 | 715 | 9.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 764 | 799 | 3.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 623 | 650 | 0.25 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 620 | 823 | 4.28E-38 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 134 | 391 | 4.68E-18 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 597 | 827 | 1.9E-76 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 152 | 389 | 9.9E-24 | - |
| SMART | SM00320 | WD40_4 | 761 | 799 | 4.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 718 | 757 | 3.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 37 | 381 | 2.7E-5 | IPR000719 |
| SMART | SM00320 | WD40_4 | 616 | 651 | 0.47 | IPR001680 |
| SMART | SM00320 | WD40_4 | 675 | 715 | 8.9E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 682 | 724 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 682 | 717 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 768 | 808 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 37 | 381 | 12.711427 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 768 | 801 | 10.627413 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 786 | 800 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 786 | 800 | 3.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 744 | 758 | 3.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 702 | 716 | 3.9E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_011004650.1 | PREDICTED: protein SPA1-RELATED 3 isoform X2 [Populus euphratica] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | U5GXF3 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G399600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology