Basic Information
Locus ID:
populus_peu00525
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
spa1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7145385 | 7152551 | + | populus_peu00525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 99,296.87 Da | 60.51 | 77.35 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 678 | 714 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 763 | 798 | 3.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 592 | 879 | 9.02E-46 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 74 | 361 | 7.27E-21 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 567 | 883 | 4.6E-107 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 92 | 359 | 6.3E-25 | - |
| SMART | SM00220 | serkin_6 | 23 | 351 | 1.8E-5 | IPR000719 |
| SMART | SM00320 | WD40_4 | 586 | 621 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 632 | 671 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 760 | 798 | 4.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 674 | 714 | 8.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 842 | 881 | 48.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 717 | 756 | 3.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 351 | 13.064776 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 767 | 800 | 10.627413 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 681 | 716 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 681 | 723 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 767 | 807 | 12.947979 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 785 | 799 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 785 | 799 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 658 | 672 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 701 | 715 | 3.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 195 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_011004650.1 | PREDICTED: protein SPA1-RELATED 3 isoform X2 [Populus euphratica] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | U5GXF3 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G399600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology