Basic Information
Locus ID:
populus_peu00265
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DNA repair protein recA homolog 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3410468 | 3415084 | + | populus_peu00265 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 46,729.20 Da | 35.95 | 87.70 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 76 | 396 | 6.85155E-178 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 79 | 341 | 5.5E-118 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 77 | 340 | 5.24E-54 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 341 | 398 | 9.42E-18 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 106 | 407 | 2.4E-103 | IPR027417 |
| SMART | SM00382 | AAA_5 | 128 | 299 | 5.8E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 76 | 396 | 3.3E-144 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 107 | 265 | 26.286699 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 270 | 345 | 28.081223 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 284 | 292 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 236 | 265 | 1.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 164 | 193 | 1.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 281 | 309 | 1.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 316 | 345 | 1.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 198 | 227 | 1.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 370 | 387 | 1.7E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 77 | 402 | 44.963928 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_011004871.1 | PREDICTED: DNA repair protein recA homolog 1, chloroplastic [Populus euphratica] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A6M2F4W9 | DNA repair protein recA homolog 1, chloroplastic OS=Populus davidiana OX=266767 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology