Basic Information
Locus ID:
pistato.v30294460
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_590 | 78994 | 80686 | + | pistato.v30294460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 47,846.67 Da | 37.67 | 99.54 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 32 | 74 | 9.99618E-22 | - |
| Pfam | PF04564 | U-box domain | 29 | 99 | 2.1E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 133 | 412 | 1.56E-15 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 104 | 1.1E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 129 | 415 | 8.0E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 105 | 2.2E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 31 | 94 | 1.3E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 27 | 101 | 29.590633 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_044467002.1 | U-box domain-containing protein 21-like [Mangifera indica] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J1AZC5 | RING-type E3 ubiquitin transferase OS=Herrania umbratica OX=108875 GN=LOC110422661 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology