Basic Information
Locus ID:
pistato.v30291410
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_179 | 494942 | 501745 | - | pistato.v30291410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 61,718.19 Da | 42.06 | 95.19 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 187 | 226 | 1.01433E-5 | IPR018392 |
| Pfam | PF01476 | LysM domain | 127 | 167 | 0.063 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 292 | 525 | 7.4E-36 | IPR001245 |
| Pfam | PF01476 | LysM domain | 188 | 217 | 0.0028 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 186 | 233 | 3.14E-5 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 282 | 539 | 8.59E-59 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 171 | 242 | 7.2E-7 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 279 | 342 | 5.8E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 343 | 538 | 4.2E-49 | - |
| SMART | SM00257 | LysM_2 | 120 | 167 | 2.7 | IPR018392 |
| SMART | SM00257 | LysM_2 | 187 | 233 | 0.19 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 271 | 532 | 29.092731 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 186 | 232 | 10.344529 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_031270095.1 | protein LYK5-like isoform X1 [Pistacia vera] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7H5Z0 | Protein LYK5-like OS=Acer yangbiense OX=1000413 GN=EZV62_021001 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology