Basic Information
Locus ID:
pistato.v30290820
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_173 | 906182 | 910354 | - | pistato.v30290820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 43,408.74 Da | 32.67 | 79.74 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 192 | 0.046 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 53 | 359 | 4.12E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 242 | 381 | 4.6E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 57 | 241 | 2.5E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 151 | 192 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 236 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 316 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 59 | 98 | 140.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 192 | 9.138305 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_044467238.1 | protein TOPLESS-RELATED PROTEIN 2-like isoform X4 [Mangifera indica] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | V4VTC2 | Protein TOPLESS (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v100185901mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11623 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020459, gene:ENSEOMG00000023519 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30099700, pistato.v30131470, pistato.v30239300 ... |
| Apiaceae | Apium graveolens | 4 | Ag1G00504, Ag4G00115, Ag8G00391, Ag9G01177 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1096 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1192 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g04310 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22400 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G011540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G349600, Tel7E01G139800 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1074 |
| Rhizophoraceae | Rhizophora apiculata | 7 | nbisL1-mrna-12322, nbisL1-mrna-17438, nbisL1-mrna-17859 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-17231, nbisL1-mrna-23337, nbisL1-mrna-24305 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu33348 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006615 |