Basic Information
Locus ID:
pistato.v30287110
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1353 | 2642 | 9274 | - | pistato.v30287110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 47,204.43 Da | 48.08 | 68.26 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 251 | 344 | 1.16026E-30 | - |
| CDD | cd12352 | RRM1_TIA1_like | 50 | 120 | 1.39891E-37 | - |
| CDD | cd12619 | RRM2_PUB1 | 134 | 208 | 7.9645E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 253 | 319 | 7.2E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 135 | 205 | 2.7E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 50 | 116 | 1.8E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 239 | 319 | 4.48E-17 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 47 | 213 | 2.04E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 229 | 329 | 2.0E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 128 | 225 | 1.8E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 41 | 127 | 5.7E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 252 | 321 | 5.3E-13 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 134 | 207 | 8.5E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 49 | 118 | 1.4E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 251 | 331 | 13.634825 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 48 | 122 | 15.340365 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 133 | 211 | 17.06296 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 247 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_031260262.1 | oligouridylate-binding protein 1-like isoform X1 [Pistacia vera] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J5Y4W4 | Oligouridylate-binding protein 1-like OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46208 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology