halophFGD

Basic Information

Locus ID: pistato.v30286270

Species & Taxonomic ID: Pistacia vera & 55513

Genome Assembly: GWHBKLD00000000

Short Name: rpl16

Description: 50S ribosomal protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_1243	7721	11391	+	pistato.v30286270

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.99	29,995.70 Da	37.78	85.04	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01433	Ribosomal_L16_L10e	160	269	5.40996E-51	IPR016180
Pfam	PF00252	Ribosomal protein L16p/L10e	141	269	1.9E-48	IPR016180
Pfam	PF03947	Ribosomal Proteins L2, C-terminal domain	1	81	9.0E-28	IPR022669
Pfam	PF00189	Ribosomal protein S3, C-terminal domain	83	136	7.7E-15	IPR001351
SUPERFAMILY	SSF54686	Ribosomal protein L16p/L10e	139	271	4.32E-54	IPR036920
SUPERFAMILY	SSF54821	Ribosomal protein S3 C-terminal domain	78	133	6.41E-15	IPR036419
SUPERFAMILY	SSF50104	Translation proteins SH3-like domain	1	82	1.32E-27	IPR008991
Gene3D	G3DSA:2.30.30.30	-	1	63	1.5E-29	IPR014722
Gene3D	G3DSA:3.90.1170.10	Ribosomal protein L10e/L16	159	272	1.3E-51	IPR036920
Gene3D	G3DSA:3.30.1140.32	-	74	151	3.0E-12	IPR036419
SMART	SM01382	Ribosomal_L2_C_2	1	109	6.1E-24	IPR022669
TIGRFAM	TIGR01164	rplP_bact: ribosomal protein uL16	139	264	2.6E-60	IPR000114
ProSitePatterns	PS00586	Ribosomal protein L16 signature 1.	196	207	-	IPR020798
ProSitePatterns	PS00701	Ribosomal protein L16 signature 2.	219	230	-	IPR020798
PRINTS	PR00060	Ribosomal protein L16 signature	225	254	1.3E-40	IPR000114
PRINTS	PR00060	Ribosomal protein L16 signature	161	173	1.3E-40	IPR000114
PRINTS	PR00060	Ribosomal protein L16 signature	179	190	1.3E-40	IPR000114
PRINTS	PR00060	Ribosomal protein L16 signature	195	224	1.3E-40	IPR000114
Hamap	MF_01342	50S ribosomal protein L16 [rplP].	138	271	38.892086	IPR000114

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome) GO:0019843 (rRNA binding)

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K02878 (large subunit ribosomal protein L16)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	ATCG00790.1	ribosomal protein L16. chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit
RefSeq	YP_010311467.1	50S ribosomal protein L16 (chloroplast) [Vitis lanceolatifoliosa]
Swiss-Prot	Q09ME0	Large ribosomal subunit protein uL16c OS=Citrus sinensis OX=2711 GN=rpl16 PE=3 SV=1
TrEMBL	A0A5N6NN09	Ribosomal_L2_C domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_18363 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	5	Ah002512, Ah009417, Ah009504, Ah020365, Ah038710
Amaranthaceae	Beta vulgaris	1	BVRB_4g074590
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg17398, Sbi_jg62047
Amaranthaceae	Salicornia europaea	3	Seu_jg18715, Seu_jg28763, Seu_jg661
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00013878, GOSA_00016163, GOSA_00028360, GOSA_00029402
Amaranthaceae	Suaeda glauca	4	Sgl24275, Sgl29450, Sgl65191, Sgl69606
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000010839, gene:ENSEOMG00000028111 ... gene:ENSEOMG00000042409, gene:ENSEOMG00000043072
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3BG0010450, CQ.Regalona.r1.3BG0014670 ... CQ.Regalona.r1.6AG0011920, CQ.Regalona.r1.7AG0004630, CQ.Regalona.r1.7AG0012500, CQ.Regalona.r1.8AG0015250
Anacardiaceae	Pistacia vera	2	pistato.v30286270, pistato.v30289630
Arecaceae	Cocos nucifera	1	scaffold001846G000010
Arecaceae	Phoenix dactylifera	3	gene-KEH32_p32, gene-PhdaC_p060, gene-PhdaC_p98
Asteraceae	Flaveria trinervia	4	Ftri14G27475, Ftri3G15079, Ftri5G23957, Ftri8G14513
Brassicaceae	Arabidopsis thaliana	2	ATCG00790.1, ATMG00080.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10001268m.g.v1.0, Thhalv10018971m.g.v1.0
Brassicaceae	Brassica nigra	2	BniB03g050570.2N, BniS17981g060.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq02G0395, Ceq02G1883, Ceq03G0777, Ceq05G1627, Ceq05G1956 ... Ceq05G1964
Casuarinaceae	Casuarina glauca	2	Cgl02G0420, Cgl05G1945
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g09050
Dunaliellaceae	Dunaliella salina	1	Dusal.0377s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g08520
Plantaginaceae	Plantago ovata	1	Pov_00025837
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2BG0167710, gene-QOZ80_3AG0229720 ... gene-QOZ80_7AG0563810, gene-QOZ80_7AG0564470, gene-QOZ80_7BG0588560
Poaceae	Oryza sativa	7	LOC_Os01g57958.1, LOC_Os04g16826.1, LOC_Os05g22724.1 ... LOC_Os09g19954.1, LOC_Os10g21344.1, LOC_Os12g34056.1, LOC_Os12g34128.1
Poaceae	Paspalum vaginatum	2	gene-BS78_K113900, gene-BS78_K265000
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0600700
Poaceae	Sporobolus alterniflorus	6	Chr0G016280, Chr0G016730, Chr0G016940, Chr0G022780 ... Chr23G016140, Chr26G004990
Poaceae	Thinopyrum elongatum	16	Tel2E01G614000, Tel2E01G878200, Tel2E01G883400 ... Tel3E01G064200, Tel3E01G705200, Tel4E01G493000, Tel4E01G619300, Tel5E01G211800, Tel5E01G212400, Tel5E01G370900, Tel6E01G725700, Tel7E01G269600, Tel7E01G440600, Tel7E01G737400, Tel7E01G836300, Tel7E01G836500
Poaceae	Triticum dicoccoides	17	gene_TRIDC1AG063670, gene_TRIDC1BG011870 ... gene_TRIDC1BG066780, gene_TRIDC2BG038930, gene_TRIDC3AG059440, gene_TRIDC3AG061130, gene_TRIDC4AG060220, gene_TRIDC4BG002940, gene_TRIDC4BG036410, gene_TRIDC5BG016020, gene_TRIDC5BG040430, gene_TRIDC6AG010690, gene_TRIDC6AG029060, gene_TRIDC7AG039910, gene_TRIDC7AG054660, gene_TRIDC7BG050150, gene_TRIDC7BG057140
Poaceae	Triticum aestivum	17	TraesCS1A02G433800.1.cds1, TraesCS2B02G570200.1.cds1 ... TraesCS2D02G243100.1.cds1, TraesCS3D02G057900.1.cds1, TraesCS3D02G197200.1.cds1, TraesCS3D02G383100.1.cds1, TraesCS4D02G146600.1.cds1, TraesCS5B02G096800.1.cds1, TraesCS5B02G541100.1.cds1, TraesCS5B02G573100.1.cds1, TraesCS5B02G573400.1.cds1, TraesCS5D02G080000.1.cds1, TraesCS5D02G546800.1.cds1, TraesCS6A02G192300.1, TraesCS6A02G194300.1.cds1, TraesCS7B02G429300.1.cds1, TraesCS7B02G457200.1.cds1
Portulacaceae	Portulaca oleracea	2	evm.TU.LG08.1381, evm.TU.LG22.279
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g01510, gene.Posoc04g08390
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_399_RagTag.2, evm.TU.Scaffold_4_RagTag.1737
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-26000
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-22768, nbisL1-mrna-4540
Rhizophoraceae	Kandelia obovata	1	Maker00000671
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-17541
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-24643, nbisL1-mrna-9448
Salicaceae	Populus euphratica	1	populus_peu14625
Solanaceae	Lycium barbarum	2	gene-LOC132617919, gene-LOC132639483
Solanaceae	Solanum chilense	1	SOLCI003084900
Solanaceae	Solanum pennellii	1	gene-LOC114077201
Tamaricaceae	Reaumuria soongarica	1	STRG.32170_chr09_-
Tamaricaceae	Tamarix chinensis	2	TC05G2036, TC06G0060
Zosteraceae	Zostera marina	2	Zosma05g21490.v3.1, Zosma70g00010.v3.1