Basic Information
Locus ID:
pistato.v30285750
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_12 | 5239164 | 5245903 | - | pistato.v30285750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 90,524.01 Da | 53.54 | 85.98 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 634 | 693 | 4.82419E-11 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 632 | 693 | 1.2E-7 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 244 | 350 | 5.0E-6 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 128 | 383 | 7.75E-17 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 631 | 694 | 7.44E-13 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 629 | 699 | 1.2E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 395 | 1.2E-25 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 630 | 694 | 5.6E-9 | IPR014720 |
| SMART | SM00577 | forpap2 | 201 | 361 | 4.5E-9 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 377 | 13.773308 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 629 | 695 | 13.421957 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 809 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_031261443.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Pistacia vera] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A067DXN7 | protein-serine/threonine phosphatase OS=Citrus sinensis OX=2711 GN=CISIN_1g003896mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology