Basic Information
Locus ID:
pistato.v30285400
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
F-box associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_12 | 4850611 | 4851288 | - | pistato.v30285400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 25,981.04 Da | 55.95 | 80.93 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 13 | 51 | 6.3E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 63 | 2.09E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 62 | 2.7E-10 | - |
| SMART | SM00256 | fbox_2 | 16 | 57 | 2.9E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 10 | 57 | 10.610234 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19940.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_031254522.1 | F-box protein At1g52495-like [Pistacia vera] | 0 |
| TrEMBL | A0A7N2M4Q7 | F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_17537, gene_17538, gene_18174, gene_18175, gene_18176 ... |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014614, Ah014657 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g002990 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg28880 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6462, Seu_jg6840 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl02564, Sgl07719, Sgl29549 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004485, gene:ENSEOMG00000007793 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0005320, CQ.Regalona.r1.8BG0004300 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285400 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.284 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18723 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611587 |