Basic Information
Locus ID:
pistato.v30285360
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_12 | 4809662 | 4810852 | - | pistato.v30285360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 45,430.00 Da | 46.40 | 91.01 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 53 | 4.7E-8 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 215 | 301 | 3.7E-7 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 64 | 3.53E-11 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 99 | 359 | 4.45E-6 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 66 | 7.3E-10 | - |
| SMART | SM00256 | fbox_2 | 18 | 59 | 1.1E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 110 | 314 | 1.4E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 59 | 11.643516 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52320.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_050243823.1 | F-box protein At5g49610-like [Quercus robur] | 0 |
| Q9FT50 | Putative F-box protein At3g52320 OS=Arabidopsis thaliana OX=3702 GN=At3g52320 PE=4 SV=1 | 0 | |
| TrEMBL | A0A7N2M4Q7 | F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 3 | pistato.v30285360, pistato.v30285370, pistato.v30285390 |
| Apiaceae | Apium graveolens | 3 | Ag5G00177, Ag8G00115, Ag8G00116 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1075, evm.TU.LG10.698 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1762 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5563 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1417 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18724 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13722 |
| Solanaceae | Solanum chilense | 3 | SOLCI001505700, SOLCI003744300, SOLCI006902700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107029936, gene-LOC107029937, gene-LOC114076361 |