Basic Information
Locus ID:
pistato.v30282010
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1073 | 31361 | 37750 | + | pistato.v30282010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 103,820.58 Da | 37.38 | 102.05 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 403 | 661 | 6.5317E-68 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 93 | 293 | 1.08059E-107 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 687 | 907 | 1.09542E-118 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 440 | 637 | 8.0E-15 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 111 | 245 | 4.6E-16 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 707 | 854 | 5.2E-30 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 403 | 666 | 8.76E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 92 | 315 | 2.66E-52 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 680 | 915 | 7.89E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 87 | 321 | 1.9E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 75 | 1.0E-5 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 675 | 926 | 1.7E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 365 | 666 | 3.4E-39 | IPR036640 |
| SMART | SM00382 | AAA_5 | 715 | 900 | 5.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 120 | 293 | 5.7E-8 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 90 | 316 | 21.081881 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 691 | 923 | 18.767633 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 440 | 611 | 21.947861 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 218 | 232 | - | IPR017871 |
| Coils | Coil | Coil | 360 | 380 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_031253303.1 | ABC transporter C family member 3-like [Pistacia vera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5P6F1 | ABC-type xenobiotic transporter (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_106090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology