Basic Information
Locus ID:
pistato.v30280790
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
AAA-type ATPase family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 29528405 | 29529694 | + | pistato.v30280790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 40,373.84 Da | 56.59 | 85.61 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18139 | HLD_clamp_RarA | 260 | 350 | 1.22022E-8 | - |
| CDD | cd00009 | AAA | 136 | 248 | 1.62599E-5 | - |
| Pfam | PF16193 | AAA C-terminal domain | 274 | 367 | 1.4E-17 | IPR032423 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 135 | 303 | 7.89E-22 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 110 | 254 | 8.7E-22 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 255 | 320 | 8.5E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 74 | - | - |
| Coils | Coil | Coil | 313 | 333 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24290.1 | AAA-type ATPase family protein. | 0 |
| RefSeq | XP_031287010.1 | ATPase WRNIP1-like [Pistacia vera] | 0 |
| Q8CG07 | ATPase WRNIP1 OS=Rattus norvegicus OX=10116 GN=Wrnip1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5MX07 | UBA domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_003000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 3 | pistato.v30280790, pistato.v30280820, pistato.v30280980 |