Basic Information
Locus ID:
pistato.v30277770
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 23828264 | 23836331 | + | pistato.v30277770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 81,725.10 Da | 43.56 | 86.30 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 558 | 670 | 5.2E-26 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 12 | 118 | 2.2E-14 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 219 | 472 | 9.4E-74 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 12 | 149 | 1.14E-24 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 9 | 122 | 3.0E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 279 | 396 | 8.0E-46 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 398 | 495 | 1.4E-26 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 121 | 15.111734 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 37 | 54 | - | IPR018200 |
| Coils | Coil | Coil | 137 | 157 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_044503700.1 | ubiquitin C-terminal hydrolase 12 isoform X1 [Mangifera indica] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | V4S6Y4 | ubiquitinyl hydrolase 1 OS=Citrus clementina OX=85681 GN=CICLE_v10010943mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology