Basic Information
Locus ID:
pistato.v30277170
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 22527061 | 22530016 | + | pistato.v30277170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 50,727.36 Da | 44.50 | 72.77 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 157 | 427 | 2.07042E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 342 | 0.013 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 173 | 231 | 5.6E-8 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 291 | 3.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 393 | 427 | 0.0083 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 137 | 428 | 1.28E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 83 | 430 | 2.3E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 168 | 207 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 342 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 385 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 248 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 291 | 2.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 163 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 427 | 2.7E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 175 | 216 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 259 | 291 | 12.051043 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 395 | 428 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 395 | 428 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 259 | 291 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 175 | 207 | 9.256512 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_031268795.1 | cell division cycle 20.2, cofactor of APC complex-like [Pistacia vera] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | V4SW50 | ANAPC4_WD40 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10011710mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology