Basic Information
Locus ID:
pistato.v30276840
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 21745046 | 21753185 | + | pistato.v30276840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 110,546.76 Da | 43.87 | 85.94 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 823 | 967 | 4.08483E-50 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 376 | 966 | 5.7E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 374 | 968 | 2.16E-105 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 761 | 971 | 3.1E-53 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 371 | 574 | 5.5E-66 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 376 | 969 | 55.109634 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 377 | 392 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 912 | 929 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_031285638.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Pistacia vera] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7HM66 | Ubiquitin carboxyl-terminal hydrolase OS=Acer yangbiense OX=1000413 GN=EZV62_015939 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology