Basic Information
Locus ID:
pistato.v30274110
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 9420737 | 9424035 | + | pistato.v30274110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 63,591.54 Da | 62.60 | 87.58 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 382 | 425 | 6.29016E-17 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 100 | 143 | 7.35239E-17 | - |
| Pfam | PF13639 | Ring finger domain | 100 | 143 | 7.8E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 382 | 425 | 6.8E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 100 | 153 | 3.53E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 382 | 431 | 1.41E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 345 | 429 | 2.7E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 151 | 1.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 101 | 142 | 6.1E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 383 | 424 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 101 | 143 | 12.223724 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 383 | 425 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 478 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17905.1 | RING/U-box superfamily protein. Putative RING-H2 finger protein ATL4H. | 0 |
| RefSeq | XP_031278254.1 | RING-H2 finger protein ATL52-like [Pistacia vera] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7HNK4 | RING-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_016223 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15013 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20206 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030722 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g161280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27243, Sbi_jg33291 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7993 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005691 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71325, Sgl74920 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008226, gene:ENSEOMG00000035854 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0018960, CQ.Regalona.r1.7BG0021520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30274110 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G01630, Ftri12G07226 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2190 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1492 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6105 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15304 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3968 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.207 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19831 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-399 |