Basic Information
Locus ID:
pistato.v30273620
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 8569397 | 8572141 | - | pistato.v30273620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 35,505.59 Da | 53.54 | 49.31 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14634 | zinc-RING finger domain | 182 | 227 | 5.2E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 230 | 288 | 1.6E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 47 | 128 | 7.3E-18 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 231 | 3.26E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 119 | 176 | 4.97E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 43 | 118 | 1.96E-15 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 175 | 245 | 5.3E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 254 | 296 | 8.1E-20 | - |
| SMART | SM00184 | ring_2 | 183 | 225 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 118 | 182 | 34.601856 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 40 | 116 | 24.947933 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 183 | 226 | 11.736875 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_031278826.1 | E3 ubiquitin-protein ligase RZFP34-like [Pistacia vera] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HN16 | E3 ubiquitin-protein ligase MIEL1-like OS=Acer yangbiense OX=1000413 GN=EZV62_016259 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology