Basic Information
Locus ID:
pistato.v30272400
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 5977828 | 5982424 | - | pistato.v30272400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 57,220.69 Da | 47.62 | 83.96 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 270 | 318 | 5.12733E-16 | - |
| Pfam | PF12906 | RING-variant domain | 270 | 317 | 9.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 266 | 321 | 2.83E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 325 | 1.9E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 269 | 318 | 2.4E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 262 | 324 | 19.038816 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031284432.1 | uncharacterized protein LOC116143153 isoform X1 [Pistacia vera] | 0 |
| TrEMBL | A0A061EZX3 | Binding protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_022132 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology