Basic Information
Locus ID:
pistato.v30271920
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 5406829 | 5416025 | + | pistato.v30271920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 173,201.45 Da | 48.94 | 91.97 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1159 | 1554 | 2.35841E-115 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1205 | 1556 | 1.8E-80 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1154 | 1549 | 1.44E-94 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 105 | 535 | 9.91E-38 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1440 | 1554 | 2.8E-34 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1102 | 1338 | 1.6E-42 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 93 | 543 | 1.1E-50 | IPR011989 |
| SMART | SM00119 | hect_3 | 1168 | 1556 | 4.0E-92 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1185 | 1556 | 60.396542 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_031268299.1 | E3 ubiquitin-protein ligase UPL4 isoform X2 [Pistacia vera] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | V4ST42 | HECT-type E3 ubiquitin transferase OS=Citrus clementina OX=85681 GN=CICLE_v10010897mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology