Basic Information
Locus ID:
pistato.v30270850
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4093823 | 4102054 | - | pistato.v30270850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 101,951.77 Da | 48.89 | 80.40 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 444 | 494 | 3.7E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 246 | 301 | 1.2E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 585 | 641 | 3.09E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 503 | 555 | 1.62E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 737 | 828 | 5.31E-7 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 498 | 575 | 5.3E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 732 | 838 | 2.4E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 584 | 646 | 5.5E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 510 | 551 | 8.6E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 587 | 644 | 0.0011 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 585 | 646 | 8.5644 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 508 | 553 | 10.104099 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 511 | 550 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 588 | 643 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 131 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_031259836.1 | uncharacterized protein LOC116117995 [Pistacia vera] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HNE3 | PHD-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_016426 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology