Basic Information
Locus ID:
pistato.v30267630
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 681035 | 681787 | - | pistato.v30267630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 28,248.02 Da | 37.38 | 94.72 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00139 | Legume lectin domain | 1 | 37 | 9.2E-8 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 110 | 246 | 9.4E-29 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 85 | 249 | 1.23E-47 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1 | 130 | 8.2E-19 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 1 | 58 | 4.4E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 94 | 185 | 1.6E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 186 | 250 | 2.9E-16 | - |
| SMART | SM00220 | serkin_6 | 109 | 250 | 7.9E-5 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 109 | 250 | 26.647549 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 115 | 139 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 231 | 243 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01550.1 | lectin receptor kinase a4.1. Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. | 0 |
| RefSeq | XP_031248127.1 | lectin-domain containing receptor kinase VI.3-like [Pistacia vera] | 0 |
| Q9M020 | Lectin-domain containing receptor kinase VI.3 OS=Arabidopsis thaliana OX=3702 GN=LECRK63 PE=2 SV=1 | 0 | |
| TrEMBL | V4SUN8 | Protein kinase domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10013651mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah001977 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30267630 |
| Brassicaceae | Brassica nigra | 1 | BniB02g024140.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2160 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_007504 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G400000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG084160 |