Basic Information
Locus ID:
pistato.v30264420
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 22448635 | 22454926 | - | pistato.v30264420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 49,927.41 Da | 37.26 | 87.07 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 118 | 138 | 3.1E-4 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 180 | 253 | 9.6E-11 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 22 | 113 | 3.7E-13 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 258 | 2.93E-45 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 148 | 2.4E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 149 | 260 | 3.7E-20 | IPR036770 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0056 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 3.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 4.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 148 | 0.099 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 1.5E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 11.771206 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.142647 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.28877 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.23535 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.45751 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.807884 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.83145 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 274 | 324 | 9.479666 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.25033 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 11.028328 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 289 | 298 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 5.5E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 5.5E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_031285077.1 | probable E3 ubiquitin-protein ligase XBOS32 [Pistacia vera] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2H5P7Z3 | RING-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_111890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology