Basic Information
Locus ID:
pistato.v30261630
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 15391749 | 15400720 | + | pistato.v30261630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 64,941.41 Da | 30.31 | 102.78 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 455 | 551 | 1.1773E-27 | - |
| CDD | cd00030 | C2 | 276 | 378 | 3.59912E-26 | - |
| Pfam | PF00168 | C2 domain | 274 | 378 | 2.1E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 84 | 260 | 3.9E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 453 | 548 | 2.9E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 450 | 572 | 3.13E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 272 | 404 | 1.42E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 270 | 407 | 1.1E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 436 | 571 | 3.8E-35 | IPR035892 |
| SMART | SM00239 | C2_3c | 275 | 375 | 6.4E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 454 | 552 | 4.9E-25 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 255 | 376 | 21.131058 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 79 | 261 | 27.750656 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 436 | 553 | 21.656584 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 470 | 482 | 8.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 518 | 526 | 8.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 496 | 509 | 8.9E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_031250532.1 | synaptotagmin-5 [Pistacia vera] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5D2UF17 | Synaptotagmin-5-like OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G060700v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology