Basic Information
Locus ID:
pistato.v30260380
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 11935898 | 11943027 | + | pistato.v30260380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 44,903.80 Da | 47.28 | 66.92 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 251 | 325 | 2.28057E-36 | - |
| CDD | cd12352 | RRM1_TIA1_like | 50 | 120 | 1.00881E-37 | - |
| CDD | cd12619 | RRM2_PUB1 | 134 | 208 | 3.49187E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 253 | 319 | 1.3E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 135 | 205 | 2.5E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 50 | 116 | 1.6E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 242 | 331 | 5.57E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 47 | 213 | 1.63E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 128 | 225 | 1.6E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 229 | 330 | 8.0E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 43 | 127 | 5.6E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 49 | 118 | 1.4E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 252 | 321 | 2.9E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 134 | 207 | 8.5E-23 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 251 | 325 | 14.91398 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 133 | 211 | 17.06296 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 48 | 122 | 15.340365 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 247 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_031260262.1 | oligouridylate-binding protein 1-like isoform X1 [Pistacia vera] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J5Y4W4 | Oligouridylate-binding protein 1-like OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46208 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology