Basic Information
Locus ID:
pistato.v30259600
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 10782999 | 10785170 | - | pistato.v30259600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 48,920.70 Da | 43.14 | 93.56 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 270 | 400 | 9.99627E-59 | - |
| CDD | cd17939 | DEADc_EIF4A | 50 | 259 | 6.4603E-131 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 82 | 243 | 5.1E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 283 | 391 | 7.3E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 126 | 411 | 3.78E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 36 | 265 | 3.4E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 266 | 430 | 2.6E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 310 | 391 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 76 | 273 | 4.8E-57 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 88 | 258 | 28.880865 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 45 | 85 | 8.586073 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 269 | 430 | 25.845482 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 204 | 212 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_031255681.1 | DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Pistacia vera] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BEU9 | Eukaryotic initiation factor 4A-11 OS=Nyssa sinensis OX=561372 GN=F0562_022815 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology