Basic Information
Locus ID:
pistato.v30256960
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 6106112 | 6107380 | - | pistato.v30256960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 48,409.39 Da | 63.27 | 82.68 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 120 | 163 | 3.41106E-21 | - |
| Pfam | PF13639 | Ring finger domain | 120 | 163 | 7.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 169 | 2.21E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 171 | 1.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 162 | 4.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 163 | 12.784338 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 355 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031250578.1 | E3 ubiquitin-protein ligase ATL42-like [Pistacia vera] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067FSQ0 | RING-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041871mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology