Basic Information
Locus ID:
pistato.v30256820
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 5929511 | 5932175 | + | pistato.v30256820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 31,790.71 Da | 53.53 | 73.55 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 30 | 284 | 1.5E-89 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 173 | 274 | 1.96E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 170 | 286 | 2.1E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 173 | 275 | 25.846832 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_031272228.1 | auxin-responsive protein IAA27 [Pistacia vera] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HX68 | Auxin-responsive protein OS=Acer yangbiense OX=1000413 GN=EZV62_012778 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology