Basic Information
Locus ID:
pistato.v30255740
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 4883521 | 4887268 | - | pistato.v30255740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 35,987.18 Da | 44.49 | 87.55 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 58 | 109 | 4.92494E-21 | - |
| Pfam | PF12906 | RING-variant domain | 58 | 108 | 6.4E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 54 | 113 | 6.59E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 122 | 1.4E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 57 | 109 | 4.8E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 50 | 115 | 21.434143 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_031256065.1 | uncharacterized protein LOC116114046 [Pistacia vera] | 0 |
| TrEMBL | A0A067GYE5 | RING-CH-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g021423mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology