Basic Information
Locus ID:
pistato.v30254890
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 4096273 | 4106379 | + | pistato.v30254890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 120,908.83 Da | 39.57 | 80.58 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 886 | 919 | 8.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 491 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 349 | 539 | 3.66E-25 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 499 | 924 | 2.2E-40 | IPR011047 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 884 | 1073 | 1.12E-11 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 800 | 1071 | 5.5E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 312 | 550 | 1.6E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 551 | 710 | 3.7E-10 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 1.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 584 | 624 | 4.6 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.9E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 796 | 833 | 91.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 8.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 971 | 1012 | 77.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 535 | 0.0078 | IPR001680 |
| SMART | SM00320 | WD40_4 | 836 | 876 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 491 | 7.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 627 | 668 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 540 | 581 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 880 | 919 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 444 | 4.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 887 | 919 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 500 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.043597 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.880604 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 887 | 928 | 12.112524 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1079 | 1098 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_031271901.1 | topless-related protein 4-like [Pistacia vera] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5C7HWP4 | Topless-related protein 4-like OS=Acer yangbiense OX=1000413 GN=EZV62_012591 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology