Basic Information
Locus ID:
pistato.v30254140
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3465582 | 3471455 | - | pistato.v30254140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 83,064.10 Da | 45.68 | 78.38 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 58 | 173 | 2.73844E-26 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 92 | 167 | 2.9E-8 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 19 | 217 | 4.4E-28 | IPR007012 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 217 | 342 | 1.7E-56 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 345 | 403 | 1.4E-11 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 345 | 470 | 1.96E-35 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 16 | 212 | 2.0E-51 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 218 | 342 | 1.02E-49 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 51 | 207 | 4.5E-72 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 218 | 340 | 7.6E-58 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 345 | 460 | 1.6E-25 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 19 | 217 | 4.5E-72 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 516 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_031283633.1 | LOW QUALITY PROTEIN: nuclear poly(A) polymerase 4-like [Pistacia vera] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HZX0 | polynucleotide adenylyltransferase OS=Acer yangbiense OX=1000413 GN=EZV62_013329 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology