Basic Information
Locus ID:
pistato.v30253730
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3058063 | 3059352 | - | pistato.v30253730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 49,459.44 Da | 60.86 | 86.08 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 125 | 168 | 3.38389E-18 | - |
| Pfam | PF13639 | Ring finger domain | 125 | 168 | 3.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 173 | 2.29E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 176 | 1.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 126 | 167 | 3.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 168 | 12.931868 | IPR001841 |
| Coils | Coil | Coil | 229 | 249 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031258173.1 | E3 ubiquitin-protein ligase ATL42-like [Pistacia vera] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5C7HZZ7 | RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_013369 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology