Basic Information
Locus ID:
pistato.v30253170
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 2549202 | 2555158 | + | pistato.v30253170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 34,330.30 Da | 51.73 | 64.49 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 196 | 239 | 3.9E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 61 | 142 | 1.7E-19 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 133 | 190 | 1.96E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 245 | 3.83E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 58 | 132 | 4.05E-17 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 242 | 2.6E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 239 | 3.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 240 | 11.972923 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 132 | 196 | 34.152962 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 54 | 130 | 26.256721 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_031274657.1 | probable E3 ubiquitin-protein ligase RZFP34 [Pistacia vera] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067GWM1 | RING-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g021012mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology