Basic Information
Locus ID:
pistato.v30251660
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1467951 | 1474688 | + | pistato.v30251660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 81,094.02 Da | 50.33 | 68.58 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 176 | 481 | 5.27337E-166 | - |
| Pfam | PF01753 | MYND finger | 67 | 104 | 1.4E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 177 | 480 | 5.2E-44 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 173 | 488 | 4.12E-87 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 65 | 108 | 7.85E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 173 | 501 | 3.5E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 57 | 109 | 1.9E-13 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 177 | 483 | 49.64497 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 67 | 104 | 11.905141 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 67 | 104 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 178 | 193 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 521 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_031276497.1 | ubiquitin carboxyl-terminal hydrolase 18 [Pistacia vera] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067FVW7 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Citrus sinensis OX=2711 GN=CISIN_1g004724mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology