Basic Information
Locus ID:
pistato.v30250800
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 740639 | 741463 | - | pistato.v30250800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 31,206.19 Da | 27.35 | 88.50 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 161 | 243 | 7.5E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 136 | 1.1E-11 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 265 | 2.94E-91 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 269 | 2.1E-100 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_031279647.1 | probable CCR4-associated factor 1 homolog 7 [Pistacia vera] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5C7I0I4 | poly(A)-specific ribonuclease OS=Acer yangbiense OX=1000413 GN=EZV62_013609 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology