Basic Information
Locus ID:
pistato.v30250740
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 688212 | 695025 | + | pistato.v30250740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 118,407.34 Da | 45.81 | 75.41 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17584 | REC_typeB_ARR-like | 461 | 557 | 3.04214E-48 | - |
| CDD | cd02879 | GH18_plant_chitinase_class_V | 129 | 464 | 1.97873E-141 | - |
| Pfam | PF00072 | Response regulator receiver domain | 466 | 551 | 7.6E-15 | IPR001789 |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 134 | 458 | 1.9E-77 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 365 | 429 | 7.63E-13 | IPR029070 |
| SUPERFAMILY | SSF52172 | CheY-like | 466 | 564 | 1.02E-22 | IPR011006 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 130 | 462 | 8.54E-73 | IPR017853 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 623 | 676 | 1.97E-9 | IPR009057 |
| Gene3D | G3DSA:3.10.50.10 | - | 364 | 429 | 8.8E-106 | IPR029070 |
| Gene3D | G3DSA:1.10.10.60 | - | 621 | 678 | 4.3E-21 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 143 | 454 | 8.8E-106 | - |
| Gene3D | G3DSA:3.40.50.2300 | - | 455 | 579 | 8.4E-24 | - |
| SMART | SM00448 | REC_2 | 443 | 553 | 2.9E-12 | IPR001789 |
| SMART | SM00636 | 2g34 | 131 | 458 | 2.2E-100 | IPR011583 |
| TIGRFAM | TIGR01557 | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 625 | 668 | 5.7E-14 | IPR006447 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 131 | 474 | 70.561256 | IPR001223 |
| ProSiteProfiles | PS50110 | Response regulatory domain profile. | 438 | 557 | 26.382532 | IPR001789 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 236 | 244 | - | IPR001579 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 578 | - | - |
| Coils | Coil | Coil | 596 | 623 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25180.1 | response regulator 12. Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. | 0 |
| RefSeq | XP_031279693.1 | two-component response regulator ARR12-like isoform X1 [Pistacia vera] | 0 |
| A0A1B1J8Z2 | Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A6MKJ5 | Response regulatory domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_008693 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology