Basic Information
Locus ID:
pistato.v30250470
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 470863 | 477701 | + | pistato.v30250470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 112,497.87 Da | 45.20 | 89.89 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 362 | 396 | 2.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 824 | 857 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 426 | 605 | 1.88E-15 | IPR036322 |
| SUPERFAMILY | SSF50974 | Nitrous oxide reductase, N-terminal domain | 239 | 343 | 4.71E-5 | IPR011045 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 324 | 858 | 1.47E-38 | IPR036322 |
| SUPERFAMILY | SSF50974 | Nitrous oxide reductase, N-terminal domain | 830 | 1006 | 1.54E-11 | IPR011045 |
| Gene3D | G3DSA:2.130.10.10 | - | 657 | 867 | 4.2E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 868 | 1014 | 2.7E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 422 | 9.8E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 425 | 637 | 5.6E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 775 | 815 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 440 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 355 | 396 | 9.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 818 | 857 | 6.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 967 | 1001 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 288 | 75.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 489 | 529 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 909 | 949 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 349 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 728 | 772 | 96.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 825 | 858 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 362 | 405 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 26 | 7.84897 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 362 | 397 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 497 | 538 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 825 | 858 | 12.780889 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 844 | 858 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 383 | 397 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_031279553.1 | protein TOPLESS-like [Pistacia vera] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A2N9EEJ2 | Topless-related protein 1-like OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS973 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology