Basic Information
Locus ID:
pistato.v30250460
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Topless-related protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 457350 | 465130 | - | pistato.v30250460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 120,284.61 Da | 34.85 | 85.77 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 509 | 0.037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 432 | 466 | 2.4E-4 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 6 | 34 | 2.0E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 864 | 897 | 0.0081 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 322 | 509 | 1.46E-22 | IPR036322 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 865 | 1059 | 1.2E-13 | - |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 453 | 915 | 2.22E-41 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 685 | 920 | 1.4E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 923 | 1078 | 7.3E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 299 | 487 | 2.3E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 490 | 662 | 9.7E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 425 | 466 | 4.7E-4 | IPR001680 |
| SMART | SM00667 | Lish | 5 | 37 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 776 | 812 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 815 | 855 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 951 | 990 | 0.98 | IPR001680 |
| SMART | SM00320 | WD40_4 | 513 | 556 | 61.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 510 | 0.0065 | IPR001680 |
| SMART | SM00668 | ctlh | 35 | 93 | 4.3E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 380 | 419 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 559 | 599 | 0.48 | IPR001680 |
| SMART | SM00320 | WD40_4 | 858 | 897 | 7.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 358 | 27.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 865 | 897 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 432 | 475 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 36 | 93 | 12.767276 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 432 | 470 | 8.834696 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 865 | 897 | 10.021053 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 5 | 37 | 10.270076 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 567 | 608 | 10.675542 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 453 | 467 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1049 | 1080 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_031279576.1 | topless-related protein 1-like [Pistacia vera] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2N9EEB4 | Topless-related protein 1-like OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS984 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology