Basic Information
Locus ID:
pistato.v30250350
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 417496 | 421101 | + | pistato.v30250350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 62,919.89 Da | 30.38 | 98.61 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 436 | 532 | 2.81395E-25 | - |
| CDD | cd00030 | C2 | 259 | 360 | 6.93644E-22 | - |
| Pfam | PF00168 | C2 domain | 257 | 360 | 3.2E-20 | IPR000008 |
| Pfam | PF00168 | C2 domain | 434 | 534 | 3.0E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 65 | 243 | 1.5E-15 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 255 | 385 | 6.25E-27 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 431 | 553 | 2.08E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 385 | 8.8E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 415 | 553 | 4.1E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 258 | 357 | 7.9E-20 | IPR000008 |
| SMART | SM00239 | C2_3c | 435 | 533 | 5.4E-22 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 244 | 30.36022 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 416 | 534 | 20.790176 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 238 | 358 | 19.256208 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 451 | 463 | 1.5E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 477 | 490 | 1.5E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 499 | 507 | 1.5E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_031279710.1 | synaptotagmin-4-like [Pistacia vera] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067F6Q0 | Synaptotagmin-5-like OS=Citrus sinensis OX=2711 GN=CISIN_1g008305mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology