Basic Information
Locus ID:
pistato.v30250150
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 261603 | 267520 | - | pistato.v30250150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 85,832.47 Da | 43.27 | 89.50 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 548 | 581 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 410 | 729 | 2.38E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 473 | 740 | 1.3E-24 | IPR015943 |
| SMART | SM00667 | Lish | 7 | 39 | 20.0 | IPR006594 |
| SMART | SM00667 | Lish | 163 | 195 | 4.8E-6 | IPR006594 |
| SMART | SM00320 | WD40_4 | 542 | 581 | 9.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 636 | 675 | 79.0 | IPR001680 |
| SMART | SM00668 | ctlh | 37 | 95 | 2.6E-10 | IPR006595 |
| SMART | SM00668 | ctlh | 193 | 252 | 1.3E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 461 | 498 | 140.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 37 | 95 | 12.023722 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 549 | 583 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 549 | 583 | 10.785595 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 163 | 195 | 10.762566 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 193 | 252 | 9.754187 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 39 | 7.705594 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 568 | 582 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 357 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25420.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_031279532.1 | topless-related protein 4 [Pistacia vera] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5P0D7 | WD_REPEATS_REGION domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_092520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30250150 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G25420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000070m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g04630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g032840.2N |