Basic Information
Locus ID:
pistato.v30249920
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 145359 | 153869 | - | pistato.v30249920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 110,875.18 Da | 39.13 | 95.96 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 622 | 661 | 6.48037E-7 | IPR018392 |
| CDD | cd14066 | STKc_IRAK | 212 | 469 | 9.45309E-84 | - |
| Pfam | PF01476 | LysM domain | 623 | 661 | 2.7E-6 | IPR018392 |
| Pfam | PF00139 | Legume lectin domain | 9 | 133 | 1.5E-24 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 790 | 967 | 5.6E-14 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 207 | 467 | 1.4E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 190 | 495 | 1.04E-77 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 9 | 221 | 1.9E-30 | IPR013320 |
| SUPERFAMILY | SSF54106 | LysM domain | 621 | 662 | 8.63E-6 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 754 | 973 | 2.46E-29 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 621 | 662 | 1.4E-8 | IPR036779 |
| Gene3D | G3DSA:2.60.120.200 | - | 2 | 146 | 1.8E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 763 | 986 | 3.9E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 283 | 477 | 4.0E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 191 | 282 | 1.2E-31 | - |
| SMART | SM00257 | LysM_2 | 622 | 666 | 7.1E-4 | IPR018392 |
| SMART | SM00220 | serkin_6 | 206 | 470 | 1.5E-38 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 621 | 665 | 11.493841 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 651 | 984 | 17.163635 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 206 | 477 | 36.795761 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 212 | 236 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 806 | 818 | - | IPR008271 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 10 | 16 | - | IPR019825 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 324 | 336 | - | IPR008271 |
| Coils | Coil | Coil | 163 | 183 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55830.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_031286325.1 | probable L-type lectin-domain containing receptor kinase S.5 [Pistacia vera] | 0 |
| Q9FHG4 | Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana OX=3702 GN=LECRKS7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7HYX3 | non-specific serine/threonine protein kinase OS=Acer yangbiense OX=1000413 GN=EZV62_013513 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36599, jg36601 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17867 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah034687, Ah034688, Ah034689 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21591, Sbi_jg22231 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg16156, Seu_jg16157, Seu_jg16158 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00008756, GOSA_00008758, GOSA_00008759, GOSA_00008760 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl62700, Sgl62701, Sgl62702, Sgl62703, Sgl67262, Sgl67321 ... |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000017184, gene:ENSEOMG00000019633 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0021020, CQ.Regalona.r1.2AG0022820 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30249920 |
| Apiaceae | Apium graveolens | 1 | Ag4G01692 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2332 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2537 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3036, evm.TU.LG04.3038, evm.TU.LG16.568 ... |
| Salicaceae | Populus euphratica | 2 | populus_peu04773, populus_peu04774 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107027672, gene-LOC114073871 |
| Tamaricaceae | Reaumuria soongarica | 4 | STRG.32911_chr09_-, STRG.32912_chr09_-, gene_17258 ... |
| Tamaricaceae | Tamarix chinensis | 5 | TC01G1529, TC01G1531, TC02G0491, TC02G0493, TC02G0500 |